Package: wilson 2.4.2

Hendrik Schultheis

wilson: Web-Based Interactive Omics Visualization

Tool-set of modules for creating web-based applications that use plot based strategies to visualize and analyze multi-omics data. This package utilizes the 'shiny' and 'plotly' frameworks to provide a user friendly dashboard for interactive plotting.

Authors:Hendrik Schultheis [aut, cre], Jens Preussner [aut], Looso Mario [aut]

wilson_2.4.2.tar.gz
wilson_2.4.2.zip(r-4.5)wilson_2.4.2.zip(r-4.4)wilson_2.4.2.zip(r-4.3)
wilson_2.4.2.tgz(r-4.4-any)wilson_2.4.2.tgz(r-4.3-any)
wilson_2.4.2.tar.gz(r-4.5-noble)wilson_2.4.2.tar.gz(r-4.4-noble)
wilson_2.4.2.tgz(r-4.4-emscripten)wilson_2.4.2.tgz(r-4.3-emscripten)
wilson.pdf |wilson.html✨
wilson/json (API)
NEWS

# Install 'wilson' in R:
install.packages('wilson', repos = c('https://loosolab.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/loosolab/wilson/issues

On CRAN:

4.30 score 2 stars 7 scripts 243 downloads 1 mentions 40 exports 193 dependencies

Last updated 4 years agofrom:35c9bdac73. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 10 2024
R-4.5-winOKOct 10 2024
R-4.5-linuxOKOct 10 2024
R-4.4-winOKOct 10 2024
R-4.4-macOKOct 10 2024
R-4.3-winOKOct 10 2024
R-4.3-macOKOct 10 2024

Exports:andandUIClarioncolorPickercolorPickerUIcolumnSelectorcolumnSelectorUIcreate_geneviewcreate_heatmapcreate_pcacreate_scatterplotfeatureSelectorfeatureSelectorUIgeneViewgeneViewUIglobal_cor_heatmapglobal_cor_heatmapUIheatmapheatmapUIinstall_applabellabelUIlimitlimitUImarkermarkerUIorNumericorNumericUIorTextualorTextualUIparse_MaxQuantparserpcapcaUIscatterPlotscatterPlotUIset_loggertobias_parsertransformationtransformationUI

Dependencies:abindaskpassassertthatbackportsbase64encBHBiobaseBiocGenericsBiocParallelbitopsbootbroombslibcacachemcallrcarcarDatacaToolscirclizecliclueclustercodetoolscolorspacecolourpickercommonmarkComplexHeatmapcorrplotcowplotcpp11crayoncrosstalkcurldata.tableDelayedArraydendextendDerivDESeq2digestdoBydoParalleldplyrDTeggellipseemmeansestimabilityevaluatefactoextraFactoMineRfansifarverfastmapflashClustfontawesomeforeachformatRFormulafsfutile.loggerfutile.optionsgclusgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesGetoptLongggplot2ggpubrggrepelggsciggsignifGlobalOptionsgluegplotsgridExtragtablegtoolsheatmaplyhighrhtmltoolshtmlwidgetshttpuvhttrIRangesisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglambda.rlaterlatticelazyevalleapslifecyclelme4locfitlog4rmagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminiUIminqamodelrmultcompViewmunsellmvtnormnlmenloptrnnetnumDerivopensslpbkrtestpermutepillarpkgconfigplotlyplyrpngpolynomprocessxpromisespspurrrqapquantregR6rappdirsRColorBrewerRcppRcppArmadilloRcppEigenregistryreshapereshape2rintrojsrjerjsonRJSONIOrlangrmarkdownrstatixS4ArraysS4Vectorssassscalesscatterplot3dseriationshapeshinyshinycssloadersshinydashboardshinyjsshinyWidgetssnowsourcetoolsSparseArraySparseMstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttinytexTSPUCSC.utilsutf8vctrsveganviridisviridisLitewebshotwithrxfunxtableXVectoryamlzipzlibbioc

Introduction

Hendrik Schultheis

Rendered fromintro.Rmdusingknitr::rmarkdownon Oct 10 2024.

Last update: 2021-03-08
Started: 2018-07-06

Readme and manuals

Help Manual

Help pageTopics
AND module server logicand
AND module UI representationandUI
Function to generate categorical (qualitative) color palettescategoricalPalettes
Clarion R6-class definitionClarion
colorPicker module server logiccolorPicker
colorPicker module UI representationcolorPickerUI
columnSelector module server logiccolumnSelector
columnSelector module UI representationcolumnSelectorUI
Method for geneView creationcreate_geneview
Method for heatmap creationcreate_heatmap
Method for pca creation.create_pca
Method for scatter plot creationcreate_scatterplot
Function to generate diverging (two-sided) color palettes (e.g. for log2fc, zscore)divergingPalettes
Function used for downloading. Creates a zip container containing plot in png, pdf and user input in json format. Use inside 'downloadHandler' content function.download
Method to get equalized min/max values from vectorequalize
featureSelector module server logicfeatureSelector
featureSelector module guidefeatureSelectorGuide
featureSelector module UI representationfeatureSelectorUI
Force evaluation of the parent function's arguments.forceArgs
geneView's module server logicgeneView
geneView module guidegeneViewGuide
geneView's module UI representationgeneViewUI
global correlation heatmap module server logicglobal_cor_heatmap
global correlation heatmap module guideglobal_cor_heatmap_guide
global correlation heatmap module UI representationglobal_cor_heatmapUI
heatmap module server logicheatmap
heatmap module guideheatmapGuide
heatmap module UI representationheatmapUI
Download and install Wilson Appsinstall_app
label module server logiclabel
label module UI representationlabelUI
limit module server logiclimit
limit module UI representationlimitUI
logger message convenience functionlog_message
marker module server logicmarker
marker module UI representationmarkerUI
orNumeric module server logicorNumeric
orNumeric module UI representationorNumericUI
orTextual module server logicorTextual
orTextual module UI representationorTextualUI
Converting MaxQuant Output file proteinGroups.txt to CLARION format by creating a headline of metadata for each columnparse_MaxQuant
Method to parse input file.parser
pca module server logicpca
pca module guidepcaGuide
pca module UI representationpcaUI
Defines additional questions asked before CRAN submission. DO NOT EXPORT!release_questions
scatterPlot module server logicscatterPlot
scatterPlot module guidescatterPlotGuide
scatterPlot module UI representationscatterPlotUI
Function to search data for selectionsearchData
Function to generate sequential (one-sided) color palettes (e.g. for expression, enrichment)sequentialPalettes
set a log4r logger used within the packageset_logger
TOBIAS TFBS table to clarion parsertobias_parser
transformation module server logictransformation
transformation module UI representationtransformationUI